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  • eea7b8a8ca removed a line from inputs file that isnt neccessay ch b 2013-02-13 16:48:41 +0100
  • ae521fc683 this one fixes a "bug" for nyx and regridding...we also go for multithreaded... JFEngels 2013-02-13 14:59:47 +0100
  • 6ad387c0ce some improvements to makefiles... JFEngels 2013-02-07 16:34:34 +0100
  • 2c8023c1f2 Most of the stuff needed to produce initial conditions for Nyx. Still a little fragile... JFEngels 2013-02-07 15:02:07 +0100
  • d0b3896c47 if mkdir fails because directory already exists plugin should continue Sam Leitner 2013-02-05 12:55:57 -0600
  • ee563ab1f7 new cart plugin Sam Leitner 2013-02-05 12:48:30 -0600
  • 41aca84102 ramses output: fixed support for refinement masks, added passive scalar masks Oliver Hahn 2013-01-23 21:52:08 +0100
  • eb30a6014f fixed an arithmetic precision issue when computing the ellipsoid region Oliver Hahn 2013-01-23 00:05:05 +0100
  • 65ed455e36 gadget2 plugin: empty part of header is now initialized to zero, this makes it compatible with non-public gadget-2 and 3 Oliver Hahn 2013-01-22 22:10:02 +0100
  • 549c1dbd47 fixed wrong sign in new velocity frame calculation Oliver Hahn 2013-01-10 11:33:32 +0100
  • 2705f78e69 fixed correction for previous grid shift when centering velocities via explicit shift Oliver Hahn 2013-01-08 17:14:02 +0100
  • 2f4794e408 initial support for explicit shift compensation with center_vel, center_vel_posfinal... Oliver Hahn 2013-01-08 17:11:32 +0100
  • 83e381f5cb some code cleanup Oliver Hahn 2012-12-17 10:33:18 +0100
  • f36f73fba4 added back support for regions of fixed dimension Oliver Hahn 2012-12-17 10:01:28 +0100
  • 1f6059943e changed region code to have 1 cell additional bounding around ellipsoid ramses output working with masks, needs more testing Oliver Hahn 2012-12-15 00:53:01 +0100
  • 3b89c9b5cc grafic output plugin now writes out RAMSES nmls with mask support the old nmls can be written by setting output/ramses_old_nml=yes instead of output/ramses_nml=yes Oliver Hahn 2012-12-14 15:26:20 +0100
  • ce5a0253d5 fixed correct mask restriction for RAMSES/grafic Oliver Hahn 2012-12-14 15:00:25 +0100
  • 3d548c3083 fixed a bug when using boxy high-res regions fixed a bug when particles for ellipsoid generations have shift Oliver Hahn 2012-12-12 22:40:12 +0100
  • 2e0fad972b fixed correct name for RAMSES refinement maps Oliver Hahn 2012-12-11 03:26:17 +0100
  • 0db06e159c fixed a bug in the ellipsoid bounding box calculation Oliver Hahn 2012-12-11 03:14:36 +0100
  • 77a6920ed1 added support to account for shifting of region defining particles when initializing from zoomed sim Oliver Hahn 2012-12-11 02:48:52 +0100
  • d1022359e9 added untested support for output of refinement mask with RAMSES Oliver Hahn 2012-12-11 02:40:40 +0100
  • ce3b5d3029 accuracy fixes to ellipsoid determination Oliver Hahn 2012-12-11 02:31:06 +0100
  • 7cbfb01605 updates and fixes to refinement region infrastructure support for gadget preliminary tests ok Oliver Hahn 2012-12-11 02:11:04 +0100
  • 1df02fcbf6 started infrastructure for more advanced high-res regions (not cuboid) added implementation for minimal enclosing ellipsoid Oliver Hahn 2012-12-09 16:42:47 +0100
  • 025c9fbad0 bit of cleanup in the ART plugin, avoid a few compiler warnings Oliver Hahn 2012-12-09 16:42:00 +0100
  • 966e670a9d fixed a bug in the grid hierarchy generation that could lead to inconsistent grid placement when using also the option 'force_equal_extent=yes' Oliver Hahn 2012-11-23 16:41:19 +0100
  • 0b382467ba fixed a bug that caused a failing assertion Oliver Hahn 2012-11-20 17:39:47 +0100
  • 7a72cd4f0b updated code version to 1.2b Oliver Hahn 2012-11-20 16:07:50 +0100
  • f4556c30b3 merge Oliver Hahn 2012-11-20 16:06:49 +0100
  • fd9759e866 ENZO-plugin: added higher precision of refinement region position output to ENZO parameter file Oliver Hahn 2012-11-20 16:06:24 +0100
  • 2236b9f29b fixed some code causing compiler warnings Oliver Hahn 2012-11-20 16:02:32 +0100
  • cd902e787b added CIC deconvolution step to hybrid Poisson solver. This is necessary when glass or resampling is employed via CIC particle interpolation Oliver Hahn 2012-11-20 16:01:45 +0100
  • 4e1f4224fa more realistic calculation of multigrid error, no more 'no convergence' when using single precision Oliver Hahn 2012-11-20 16:00:53 +0100
  • c85b99f9cd - Some corrections to avoid warnings during compilation. - Added information about initial temperature for the baryons in the log. - Modified output file names when doing a baryon run. - Corrected bug of hubble constant units in header. Did not affect dark matter only results. Jose Onorbe 2012-11-14 14:28:04 -0800
  • f98688bd23 Added the option to write out tipsy files in native binary format, which is much faster to read in than the XDR encoded default. Choose this option by setting 'tipsy_native = yes' under [output]. Michael Kuhlen 2012-11-14 13:01:58 -0800
  • 94f863917c Unified tabbing (whitespace) in plugins/output_tipsy.cc (BSD-style with 4-space indentation). Michael Kuhlen 2012-11-14 10:59:22 -0800
  • c1bb82e30b - Some corrections to avoid warnings during compilation. - Added information about initial temperature for the baryons in the log. - Modified output file names when doing a baryon run. - Corrected bug of hubble constant units in header. Did not affect dark matter only results. Jose Onorbe 2012-10-31 00:54:31 -0700
  • b6e86bb6fb Merged in ohahn/music-iodevel (pull request #2) Oliver Hahn 2012-10-25 14:14:16 +0200
  • e505f97b9a fixed compatibility with gcc 4.7, unistd.h needs to be explicitly included Oliver Hahn 2012-10-16 10:13:14 +0200
  • 1469906cd6 fixed a bug that refinement region parameters had to be specified even when doing unigrid setups Oliver Hahn 2012-10-10 17:17:19 +0200
  • 0807dd6861 fixed a bug that required either ref_extent or ref_dims to be present even when setting up a unigrid simulation Oliver Hahn 2012-10-08 15:26:59 +0200
  • 598e8889cb added info message to screen when CIC deconvolution for kernel is switched on Oliver Hahn 2012-10-01 18:15:30 +0200
  • 8071a19a01 added support for arbitrary staggering shifts when using SPH through internal option [setup]/baryon_staggering=0..1 Oliver Hahn 2012-10-01 18:06:39 +0200
  • 709ffbe025 minor API adjustments to deal better with particle interpolation on finest grid Oliver Hahn 2012-10-01 16:45:37 +0200
  • d9fbe83bbc added new parameter [setup]/ref_dims=NX,NY,NZ to explicitly specify the resoluti on of the high resolution region. added output of comoving size of high-res region to screen added output of densest point also when using the generic output plugin Oliver Hahn 2012-09-28 15:17:25 +0200
  • 8ccd7c7dfe Implemented baryon output for ART module. Still under testing. Done some cleaning and commenting in all the ART module code. Jose Onorbe 2012-09-11 16:30:20 -0700
  • 449dbfc431 fixed another bug with the hash-key random numbers, when coarsening of noise is needed Oliver Hahn 2012-09-10 16:26:33 +0200
  • 6e8234c49e fixed a bug that caused the new hash-key based random number scheme to not work with noise read from file Oliver Hahn 2012-09-10 15:02:16 +0200
  • 5589695ef6 updated code version to 1.1b, first version with significantly reduced memory usage for very deep zooms. Oliver Hahn 2012-09-07 16:53:43 +0200
  • aff77c90dc added hash-key based generation of random number subcubes, based on need fixed a few minor bugs that could lead to crashes for small refinement regions close to the boundary Oliver Hahn 2012-09-07 16:39:53 +0200
  • 6db9e358fc fixed a bug that white noise was not read from file if levelmin_TF or levelmin was lower than the level with the white noise from file Oliver Hahn 2012-09-06 15:32:38 +0200
  • 22ab605e1e can now read white noise file with 64bit Fortran unformatted block size indicators Oliver Hahn 2012-09-06 15:24:28 +0200
  • f45bed11a9 Dark matter only art module tested and working ok. Units checked and ok. All previous questions solved. Still waiting for one last zoom test (moderate resolution 512^3) to compare it with gadget results but full box and low res zoom look ok. jonorbeb 2012-09-04 20:28:22 -0700
  • a51296c172 added new parameter [random]/grafic_sign = yes|no, (default=no) to set the sign of the input white noise file consistent with grafic2 Oliver Hahn 2012-09-04 15:19:16 +0200
  • 9275aa4529 added output of density extrema to ENZO plugin Oliver Hahn 2012-08-24 12:11:17 -0700
  • bf38faaf23 Swap endianness option fully enabled for ART module: header, particle data and pt files. jonorbe 2012-08-19 16:43:31 -0700
  • 8040f40104 Gadget-2 plugin: added new parameters for length and mass units, allowed gadget coarse particle type to be specified in parameter file. Fixed bug that H0 instead of h was written to Gadget header. Oliver Hahn 2012-08-19 13:38:49 -0700
  • e52e6ffd0b updated sample parameter file to features of current version of MUSIC Oliver Hahn 2012-08-18 16:27:57 -0700
  • 9b34875aa5 added change of endianness to data arrays in ART plugin, header etc. still need to be adjusted Oliver Hahn 2012-08-17 17:38:35 -0700
  • ab24981135 - Fixed velocity units conversion. Still final test needed. - Header ascii variable can be set in the config file. - astep variable for ART has to be given in the config file. jonorbe 2012-07-31 01:36:58 -0700
  • c7e6cd5825 ART module for dm-only operative. Right now the module generates all the files necessary with the correct format and (re-check mandatory) units. Therefore, ICs generated should run! jonorbe 2012-07-27 20:17:12 -0700
  • 3806e940c6 added code outline to read DM temporary particle files and assemble them Oliver Hahn 2012-07-27 12:27:27 -0700
  • 39025f7173 Assigning correct values to the parameters in header file. jonorbe 2012-07-27 11:43:58 -0700
  • bc7d5de346 added baryon support to tipsy output plugin Oliver Hahn 2012-07-23 12:17:24 -0700
  • 2ed1414fba added correct averaging of SPH+DM particles in coarse region Oliver Hahn 2012-07-23 12:16:05 -0700
  • 448796873d added temp file output for DM data in ART plugin Oliver Hahn 2012-07-20 19:36:59 -0700
  • c3f5a14438 made art plugin compilable Oliver Hahn 2012-07-20 19:27:33 -0700
  • b7dd1cd8e3 added baryons to tipsy file output plugin Oliver Hahn 2012-07-20 19:17:18 -0700
  • 6d43639fc6 changes output_art.cc jonorbe 2012-07-19 20:26:19 +0200
  • aa80db066a Changes is output_art.cc jonorbe 2012-07-19 19:41:57 +0200
  • e121d9547c Some changes in output_art.cc jonorbe 2012-07-19 19:14:34 +0200
  • bb700ebd7c Added output_art.cc file. jonorbe 2012-07-19 18:31:29 +0200
  • 057e35eb6d Added tag UCSC_comparison_project for changeset 72c7e4e35665 Oliver Hahn 2012-07-11 17:19:48 -0700
  • 3802e03da2 merge Oliver Hahn 2012-07-11 17:18:20 -0700
  • 52c7d83f88 Added tag UCSC_comparison_project for changeset ff41c20c58ba Oliver Hahn 2012-07-11 17:15:59 -0700
  • f10f8f9a6c version freeze for Santa Cruz Code Comparison Project Oliver Hahn 2012-07-11 17:15:45 -0700
  • 0754897c60 added possibility to restart using previously generated white noise fields via option [random]/restart = yes/no if set to yes, it will try to load the data, but all files have to exist, and the refinement hierarchy cannot be changed. Oliver Hahn 2012-03-28 14:55:16 -0700
  • a7535f3d89 fixed a bug that caused the refinement region to be always larger than specified, even if it would fit exactly. THIS SHOULD BE TESTED MORE THOROUGHLY. Oliver Hahn 2012-03-28 13:56:34 -0700
  • 19cc12a603 moved all omp function calls into #ifndef SINGLETHREAD_FFTW so that the code also compiles on non-openmp compilers Oliver Hahn 2012-03-28 12:38:31 -0700
  • 0d6d79e6bc merge Oliver Hahn 2011-09-19 18:53:48 -0700
  • 924092d96c Fixed a missing velocity unit factor when using "linger++" transfer functions, which have different velocity units than the other transfer functions, and 2LPT. Oliver Hahn 2011-09-19 18:49:43 -0700
  • db54d01b2a Re-enabled the possibility to apply a deconvolution filter when using CIC interpolation to particles positions (e.g. for a glass) by setting [output]/glass_cicdeconvolve=yes/no, default is off Oliver Hahn 2011-09-16 17:19:23 -0700
  • 3c12876d5e Added a temporary workaround for the 'music' transfer function plugin that catches cases where the transfer functions become negative at very large k. Oliver Hahn 2011-09-07 22:28:39 -0700
  • 06d1f88aa2 Gadget plugin: Fixed an overflow bug when using more than 2048**3 particles and baryons. Oliver Hahn 2011-09-06 17:08:36 -0700
  • cfc16f509d Added new option cosmology/z0norm to 'linger++' plugin. This allows to choose the normalization at z=0 or the linearly scaled from z_ini. Oliver Hahn 2011-09-06 16:39:41 -0700
  • e7f8c2e1ec Added a first DM only version of a tipsy output plugin. Credits go to Kyle Stewart and Shea Garrison-Kimmel. Oliver Hahn 2011-09-02 15:21:55 -0700
  • eb6dbfd317 Code now writes out input power spectra "input_powerspec_{cdm,baryon,total}" rather than the "transfer_k.dat" file which was confusing as it did NOT contain the k-space transfer function. Oliver Hahn 2011-08-29 18:38:38 -0700
  • 826071634a updated version to 1.01 Oliver Hahn 2011-08-29 16:12:40 -0700
  • e6137dcf07 Fixed a bug that prevented the 'MUSIC' transfer function plugin to be used when also the 'LINGER++' one was present (they used the same class name, so which one was actually used depended on the compile order rather than the user choice). Oliver Hahn 2011-08-29 16:12:14 -0700
  • 29822726ec Removed option "shift_back" for Gadget2 output as it can cause problems with zoom sims overlapping the periodic boundaries. Oliver Hahn 2011-08-29 14:00:47 -0700
  • 8ee0772b81 Removed defaut value of Omega_radiation of 8.3e-5 and replaced with zero. Nonzero Omega_r leads to small differences in transfer function normalisation when used with zero Omega_r in the simulation code, dependent on the starting redshift. Oliver Hahn 2011-08-29 12:25:23 -0700
  • e5f663ab0a Added a missing pragma that leads to errors when compiling for single-threaded FFTW3 Oliver Hahn 2011-07-21 10:43:00 -0700
  • ebd300f2fa Some more bugfixes for Gadget-2 output with very large grids. Verified to work with 2048**3. Oliver Hahn 2011-06-09 12:08:24 -0700
  • 6bc18e1aaf More 64 bit compliance fixes for output plugins. Gadget-2 output plugin now can write multiple output files. Saved a bit of memory in main loop Oliver Hahn 2011-06-08 20:58:42 -0700
  • 2ab09dd484 Cleaned up duplicate code for FFTW2/FFTW3 using some macros Oliver Hahn 2011-06-03 19:02:56 -0700
  • 03fb47cc3d Added support for very large arrays to enzo output plugin. Enzo plugin now writes in slabs rather than in one monoloithic block (saving memory). Oliver Hahn 2011-06-03 18:41:39 -0700
  • 00fd30f333 Added tag release_candidate for changeset 2d8c8adfe858 Oliver Hahn 2011-06-03 07:20:06 -0700
  • 3d02bca2b9 fixed an overflow in the FFT poisson solver normalization when using very large unigrids Oliver Hahn 2011-06-03 07:19:52 -0700
  • f397ff096e Added tag release_candidate for changeset 6072084560e1 Oliver Hahn 2011-06-02 15:24:48 -0700