From ee4318029f18f82e2d30a208c57b2b6f1f8182d8 Mon Sep 17 00:00:00 2001 From: Lukas Winkler Date: Tue, 3 Jan 2023 12:20:25 +0100 Subject: [PATCH] update dependencies --- poetry.lock | 1232 ++++++++++++++++++++++++++++++++++++++---------- pyproject.toml | 15 +- 2 files changed, 987 insertions(+), 260 deletions(-) diff --git a/poetry.lock b/poetry.lock index 59a4090..df3c6f7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -7,15 +7,73 @@ optional = false python-versions = "*" [[package]] -name = "beniget" -version = "0.4.1" -description = "Extract semantic information about static Python code" +name = "astropy" +version = "5.2" +description = "Astronomy and astrophysics core library" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.8" [package.dependencies] -gast = ">=0.5.0,<0.6.0" +numpy = ">=1.20" +packaging = ">=19.0" +pyerfa = ">=2.0" +PyYAML = ">=3.13" + +[package.extras] +all = ["asdf (>=2.10.0)", "beautifulsoup4", "bleach", "bottleneck", "certifi", "dask[array]", "fsspec[http] (>=2022.8.2)", "h5py", "html5lib", "ipython (>=4.2)", "jplephem", "matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "mpmath", "pandas", "pyarrow (>=5.0.0)", "pytest (>=7.0)", "pytz", "s3fs (>=2022.8.2)", "scipy (>=1.5)", "sortedcontainers", "typing-extensions (>=3.10.0.1)"] +docs = ["Jinja2 (>=3.0,<3.1)", "matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "pytest (>=7.0)", "scipy (>=1.3)", "sphinx (<4)", "sphinx-astropy (>=1.6)", "sphinx-changelog (>=1.2.0)"] +recommended = ["matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "scipy (>=1.5)"] +test = ["pytest (>=7.0)", "pytest-astropy (>=0.10)", "pytest-astropy-header (>=0.2.1)", "pytest-doctestplus (>=0.12)", "pytest-xdist"] +test-all = ["coverage[toml]", "ipython (>=4.2)", "objgraph", "pooch", "pytest (>=7.0)", "pytest-astropy (>=0.10)", "pytest-astropy-header (>=0.2.1)", "pytest-doctestplus (>=0.12)", "pytest-xdist", "sgp4 (>=2.3)", "skyfield (>=1.20)"] + +[[package]] +name = "blosc2" +version = "2.0.0" +description = "Python wrapper for the C-Blosc2 library." +category = "main" +optional = false +python-versions = ">=3.8, <4" + +[package.dependencies] +msgpack = "*" + +[[package]] +name = "certifi" +version = "2022.12.7" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "charset-normalizer" +version = "2.1.1" +description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." +category = "main" +optional = false +python-versions = ">=3.6.0" + +[package.extras] +unicode-backport = ["unicodedata2"] + +[[package]] +name = "contourpy" +version = "1.0.6" +description = "Python library for calculating contours of 2D quadrilateral grids" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +numpy = ">=1.16" + +[package.extras] +bokeh = ["bokeh", "selenium"] +docs = ["docutils (<0.18)", "sphinx (<=5.2.0)", "sphinx-rtd-theme"] +test = ["Pillow", "flake8", "isort", "matplotlib", "pytest"] +test-minimal = ["pytest"] +test-no-codebase = ["Pillow", "matplotlib", "pytest"] [[package]] name = "cycler" @@ -35,16 +93,16 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "fonttools" -version = "4.36.0" +version = "4.38.0" description = "Tools to manipulate font files" category = "main" optional = false python-versions = ">=3.7" [package.extras] -all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] +all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=14.0.0)", "xattr", "zopfli (>=0.1.4)"] graphite = ["lz4 (>=1.7.4.2)"] -interpolatable = ["scipy", "munkres"] +interpolatable = ["munkres", "scipy"] lxml = ["lxml (>=4.0,<5)"] pathops = ["skia-pathops (>=0.5.0)"] plot = ["matplotlib"] @@ -53,15 +111,7 @@ symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] unicode = ["unicodedata2 (>=14.0.0)"] -woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] - -[[package]] -name = "gast" -version = "0.5.3" -description = "Python AST that abstracts the underlying Python version" -category = "main" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] [[package]] name = "h5py" @@ -74,9 +124,17 @@ python-versions = ">=3.7" [package.dependencies] numpy = ">=1.14.5" +[[package]] +name = "idna" +version = "3.4" +description = "Internationalized Domain Names in Applications (IDNA)" +category = "main" +optional = false +python-versions = ">=3.5" + [[package]] name = "imageio" -version = "2.21.1" +version = "2.23.0" description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." category = "main" optional = false @@ -90,17 +148,17 @@ pillow = ">=8.3.2" all-plugins = ["astropy", "av", "imageio-ffmpeg", "opencv-python", "psutil", "tifffile"] all-plugins-pypy = ["av", "imageio-ffmpeg", "psutil", "tifffile"] build = ["wheel"] -dev = ["invoke", "pytest", "pytest-cov", "fsspec", "black", "flake8"] -docs = ["sphinx", "numpydoc", "pydata-sphinx-theme"] +dev = ["black", "flake8", "fsspec[github]", "invoke", "pytest", "pytest-cov"] +docs = ["numpydoc", "pydata-sphinx-theme", "sphinx"] ffmpeg = ["imageio-ffmpeg", "psutil"] fits = ["astropy"] -full = ["astropy", "av", "black", "flake8", "fsspec", "gdal", "imageio-ffmpeg", "invoke", "itk", "numpydoc", "opencv-python", "psutil", "pydata-sphinx-theme", "pytest", "pytest-cov", "sphinx", "tifffile", "wheel"] +full = ["astropy", "av", "black", "flake8", "fsspec[github]", "gdal", "imageio-ffmpeg", "invoke", "itk", "numpydoc", "opencv-python", "psutil", "pydata-sphinx-theme", "pytest", "pytest-cov", "sphinx", "tifffile", "wheel"] gdal = ["gdal"] itk = ["itk"] linting = ["black", "flake8"] opencv = ["opencv-python"] pyav = ["av"] -test = ["invoke", "pytest", "pytest-cov", "fsspec"] +test = ["fsspec[github]", "invoke", "pytest", "pytest-cov"] tifffile = ["tifffile"] [[package]] @@ -113,47 +171,68 @@ python-versions = ">=3.7" [[package]] name = "llvmlite" -version = "0.38.1" +version = "0.39.1" description = "lightweight wrapper around basic LLVM functionality" category = "main" optional = false -python-versions = ">=3.7,<3.11" +python-versions = ">=3.7" [[package]] name = "matplotlib" -version = "3.5.3" +version = "3.6.2" description = "Python plotting package" category = "main" optional = false +python-versions = ">=3.8" + +[package.dependencies] +contourpy = ">=1.0.1" +cycler = ">=0.10" +fonttools = ">=4.22.0" +kiwisolver = ">=1.0.1" +numpy = ">=1.19" +packaging = ">=20.0" +pillow = ">=6.2.0" +pyparsing = ">=2.2.1" +python-dateutil = ">=2.7" +setuptools_scm = ">=7" + +[[package]] +name = "mpmath" +version = "1.2.1" +description = "Python library for arbitrary-precision floating-point arithmetic" +category = "main" +optional = false +python-versions = "*" + +[package.extras] +develop = ["codecov", "pycodestyle", "pytest (>=4.6)", "pytest-cov", "wheel"] +tests = ["pytest (>=4.6)"] + +[[package]] +name = "msgpack" +version = "1.0.4" +description = "MessagePack serializer" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "numba" +version = "0.56.4" +description = "compiling Python code using LLVM" +category = "main" +optional = false python-versions = ">=3.7" [package.dependencies] -cycler = ">=0.10" -fonttools = ">=4.22.0" -kiwisolver = ">=1.0.1" -numpy = ">=1.17" -packaging = ">=20.0" -pillow = ">=6.2.0" -pyparsing = ">=2.2.1" -python-dateutil = ">=2.7" -setuptools_scm = ">=4,<7" - -[[package]] -name = "numba" -version = "0.55.2" -description = "compiling Python code using LLVM" -category = "main" -optional = false -python-versions = ">=3.7,<3.11" - -[package.dependencies] -llvmlite = ">=0.38.0rc1,<0.39" -numpy = ">=1.18,<1.23" +llvmlite = ">=0.39.0dev0,<0.40" +numpy = ">=1.18,<1.24" setuptools = "*" [[package]] name = "numexpr" -version = "2.8.3" +version = "2.8.4" description = "Fast numerical expression evaluator for NumPy" category = "main" optional = false @@ -161,11 +240,10 @@ python-versions = ">=3.7" [package.dependencies] numpy = ">=1.13.3" -packaging = "*" [[package]] name = "numpy" -version = "1.22.4" +version = "1.23.5" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -173,18 +251,15 @@ python-versions = ">=3.8" [[package]] name = "packaging" -version = "21.3" +version = "22.0" description = "Core utilities for Python packages" category = "main" optional = false -python-versions = ">=3.6" - -[package.dependencies] -pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" +python-versions = ">=3.7" [[package]] name = "pandas" -version = "1.4.3" +version = "1.5.2" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false @@ -192,10 +267,8 @@ python-versions = ">=3.8" [package.dependencies] numpy = [ - {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, - {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""}, - {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""}, {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, + {version = ">=1.23.2", markers = "python_version >= \"3.11\""}, ] python-dateutil = ">=2.8.1" pytz = ">=2020.1" @@ -205,32 +278,65 @@ test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] [[package]] name = "pillow" -version = "9.2.0" +version = "9.4.0" description = "Python Imaging Library (Fork)" category = "main" optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] +docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] [[package]] -name = "ply" -version = "3.11" -description = "Python Lex & Yacc" +name = "pooch" +version = "1.6.0" +description = "\"Pooch manages your Python library's sample data files: it automatically downloads and stores them in a local directory, with support for versioning and corruption checks.\"" category = "main" optional = false -python-versions = "*" +python-versions = ">=3.6" + +[package.dependencies] +appdirs = ">=1.3.0" +packaging = ">=20.0" +requests = ">=2.19.0" + +[package.extras] +progress = ["tqdm (>=4.41.0,<5.0.0)"] +sftp = ["paramiko (>=2.7.0)"] +xxhash = ["xxhash (>=1.4.3)"] [[package]] name = "posix-ipc" -version = "1.0.5" +version = "1.1.1" description = "POSIX IPC primitives (semaphores, shared memory and message queues) for Python" category = "main" optional = false python-versions = "*" +[[package]] +name = "py-cpuinfo" +version = "9.0.0" +description = "Get CPU info with pure Python" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "pyerfa" +version = "2.0.0.1" +description = "Python bindings for ERFA" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +numpy = ">=1.17" + +[package.extras] +docs = ["sphinx-astropy (>=1.3)"] +test = ["pytest", "pytest-doctestplus (>=0.7)"] + [[package]] name = "pynbody" version = "1.2.3" @@ -248,9 +354,9 @@ posix-ipc = ">=0.8" scipy = ">=1.0.0" [package.extras] +all = ["Sphinx (>=1.6.0,<1.7.0)", "ipython (>=3)", "pandas", "pytest", "sphinx-bootstrap-theme"] +docs = ["Sphinx (>=1.6.0,<1.7.0)", "ipython (>=3)", "sphinx-bootstrap-theme"] tests = ["pandas", "pytest"] -docs = ["sphinx-bootstrap-theme", "Sphinx (>=1.6.0,<1.7.0)", "ipython (>=3)"] -all = ["sphinx-bootstrap-theme", "Sphinx (>=1.6.0,<1.7.0)", "ipython (>=3)", "pandas", "pytest"] [[package]] name = "pyparsing" @@ -261,7 +367,7 @@ optional = false python-versions = ">=3.6.8" [package.extras] -diagrams = ["railroad-diagrams", "jinja2"] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "python-dateutil" @@ -274,26 +380,9 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" [package.dependencies] six = ">=1.5" -[[package]] -name = "pythran" -version = "0.11.0" -description = "Ahead of Time compiler for numeric kernels" -category = "main" -optional = false -python-versions = "*" - -[package.dependencies] -beniget = ">=0.4.0,<0.5.0" -gast = ">=0.5.0,<0.6.0" -numpy = "*" -ply = ">=3.4" - -[package.extras] -doc = ["guzzle-sphinx-theme", "scipy", "nbsphinx", "numpy"] - [[package]] name = "pytz" -version = "2022.2.1" +version = "2022.7" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -301,24 +390,25 @@ python-versions = "*" [[package]] name = "pyvista" -version = "0.34.2" +version = "0.37.0" description = "Easier Pythonic interface to VTK" category = "main" optional = false python-versions = ">=3.7.*" [package.dependencies] -appdirs = "*" imageio = "*" numpy = "*" pillow = "*" +pooch = "*" scooby = ">=0.5.1" vtk = "*" [package.extras] -all = ["matplotlib", "colorcet", "cmocean", "meshio"] -colormaps = ["matplotlib", "colorcet", "cmocean"] +all = ["cmocean", "colorcet", "ipyvtklink", "matplotlib", "meshio (>=5.2)", "panel", "pythreejs"] +colormaps = ["cmocean", "colorcet", "matplotlib"] io = ["meshio (>=5.2)"] +jupyter = ["ipyvtklink", "panel", "pythreejs"] [[package]] name = "pyyaml" @@ -329,19 +419,42 @@ optional = false python-versions = ">=3.6" [[package]] -name = "scipy" -version = "1.9.0" -description = "SciPy: Scientific Library for Python" +name = "requests" +version = "2.28.1" +description = "Python HTTP for Humans." category = "main" optional = false -python-versions = ">=3.8,<3.12" +python-versions = ">=3.7, <4" [package.dependencies] -numpy = ">=1.18.5,<1.25.0" +certifi = ">=2017.4.17" +charset-normalizer = ">=2,<3" +idna = ">=2.5,<4" +urllib3 = ">=1.21.1,<1.27" + +[package.extras] +socks = ["PySocks (>=1.5.6,!=1.5.7)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] + +[[package]] +name = "scipy" +version = "1.9.3" +description = "Fundamental algorithms for scientific computing in Python" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +numpy = ">=1.18.5,<1.26.0" + +[package.extras] +dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"] +doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"] +test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] [[package]] name = "scooby" -version = "0.6.0" +version = "0.7.0" description = "A Great Dane turned Python environment detective" category = "main" optional = false @@ -352,29 +465,30 @@ cpu = ["mkl", "psutil"] [[package]] name = "setuptools" -version = "65.2.0" +version = "65.6.3" description = "Easily download, build, install, upgrade, and uninstall Python packages" category = "main" optional = false python-versions = ">=3.7" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)", "sphinx-notfound-page (==0.8.3)", "sphinx-hoverxref (<2)", "pygments-github-lexers (==0.0.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-reredirects", "sphinxcontrib-towncrier", "furo"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "flake8 (<5)", "pytest-enabler (>=1.3)", "pytest-perf", "mock", "flake8-2020", "virtualenv (>=13.0.0)", "wheel", "pip (>=19.1)", "jaraco.envs (>=2.2)", "pytest-xdist", "jaraco.path (>=3.2.0)", "build", "filelock (>=3.4.0)", "pip-run (>=8.8)", "ini2toml[lite] (>=0.9)", "tomli-w (>=1.0.0)", "pytest-black (>=0.3.7)", "pytest-cov", "pytest-mypy (>=0.9.1)"] -testing-integration = ["pytest", "pytest-xdist", "pytest-enabler", "virtualenv (>=13.0.0)", "tomli", "wheel", "jaraco.path (>=3.2.0)", "jaraco.envs (>=2.2)", "build", "filelock (>=3.4.0)"] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", 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