import os import sys import tempfile import subprocess from typing import NamedTuple, Any, List, Dict import click import requests from datetime import datetime import logging # Logger logger = logging.getLogger() handler = logging.StreamHandler() formatter = logging.Formatter( "%(asctime)s %(levelname)-8s %(message)s", "%Y-%m-%d %H:%M:%S" ) handler.setFormatter(formatter) logger.addHandler(handler) logger.setLevel("INFO") # Some constants DEFAULT_URL = "https://cosmicweb.eu" EDITOR = os.environ.get("EDITOR", "vim") # Types class Ellipsoid(NamedTuple): center: int shape: int traceback_radius: int radius_definition: int class DownloadConfig(NamedTuple): simulation_name: str halo_names: List[Any] halo_urls: List[str] traceback_radius: float api_token: str MUSIC: str settings: Dict[Any, Any] accessed_at: datetime class Args(NamedTuple): url: str output_path: str common_directory: str attempts: int def query_yes_no(question, default="yes"): """Ask a yes/no question via raw_input() and return their answer. "question" is a string that is presented to the user. "default" is the presumed answer if the user just hits . It must be "yes" (the default), "no" or None (meaning an answer is required of the user). The "answer" return value is True for "yes" or False for "no". """ valid = {"yes": True, "y": True, "ye": True, "no": False, "n": False} if default is None: prompt = " [y/n] " elif default == "yes": prompt = " [Y/n] " elif default == "no": prompt = " [y/N] " else: raise ValueError("invalid default answer: '%s'" % default) while True: sys.stdout.write(question + prompt) choice = input().lower() if default is not None and choice == "": return valid[default] elif choice in valid: return valid[choice] else: sys.stdout.write("Please respond with 'yes' or 'no' " "(or 'y' or 'n').\n") # Routines def fetch_ellipsoids(url, api_token, attempts): for i in range(attempts): try: r = requests.get(url, headers={"Authorization": "Token " + api_token}) # This will raise an error if not successful r.raise_for_status() except requests.exceptions.HTTPError as e: logging.warning("Failed fetching (attempt {}/{}) ...".format(i, attempts)) logging.warning(e) else: content = r.json() return [ Ellipsoid( center=e["ellips_center"], shape=e["ellips_matrix"], radius_definition=e["radius_definition"], traceback_radius=e["traceback_radius"], ) for e in content ] logging.error("Unable to download ellipsoids from {}".format(url)) return None def fetch_ellipsoid(url, api_token, traceback_radius, attempts=3): ellipsoids = fetch_ellipsoids(url, api_token, attempts) if ellipsoids is not None: return next( (e for e in ellipsoids if e.traceback_radius == traceback_radius), None ) return None def fetch_downloadstore(cosmicweb_url, target): try: r = requests.get(cosmicweb_url + "/api/music/store/" + target) # This will raise an error if not successful r.raise_for_status() except requests.exceptions.HTTPError as e: logging.critical(f"Failed downloading from cosmICweb.") logging.critical(e) sys.exit(1) content = r.json() sim = content["simulation"] halo_urls = [ "{url}/simulation/{sid}/halo/{hid}".format( url=sim["api_url"], sid=sim["api_id"], hid=h ) for h in content["halos"] ] return DownloadConfig( simulation_name=sim["name"], halo_names=["halo_{}".format(h) for h in content["halos"]], halo_urls=halo_urls, traceback_radius=content["traceback_radius"], api_token=sim["api_token"], MUSIC=sim["ics"], settings=content["configuration"], accessed_at=datetime.now(), ) def fetch_publication(cosmicweb_url, publication_name, traceback_radius): try: r = requests.get(cosmicweb_url + "/api/publications/" + publication_name) # This will raise an error if not successful r.raise_for_status() except requests.exceptions.HTTPError as e: logging.critical("Failed downloading from cosmICweb.") logging.critical(e) sys.exit(1) content = r.json() sim = content["simulation"] halo_names = [h["name"] for h in content["halos"]] halo_urls = [ "{url}/simulation/{sid}/halo/{hid}".format( url=sim["api_url"], sid=sim["api_id"], hid=h["id"] ) for h in content["halos"] ] return DownloadConfig( simulation_name=sim["name"], halo_names=halo_names, halo_urls=halo_urls, traceback_radius=traceback_radius, api_token=sim["api_token"], MUSIC=sim["ics"], settings={}, accessed_at=datetime.now(), ) def edit_template(template): with tempfile.NamedTemporaryFile(suffix=".tmp", mode="r+") as tf: tf.write(template) tf.flush() # Call the editor. backupcopy=yes prevents vim from creating copy and rename subprocess.call([EDITOR, "+set backupcopy=yes", tf.name]) tf.seek(0) template = tf.read() return template def music_config_to_template(music_config, configuration): # TODO: apply configuraton, add header return ( "[SETUP]\n" + music_config["setup"] + "\n\n\n\n" "[COSMOLOGY]\n" + music_config["cosmology"] + "\n\n" "[RANDOM]\n" + music_config["random"] + "\n\n" "[POISSON]\n" + music_config["poisson"] ) def compose_template(template, ellipsoid): # TODO: add ellipsoid header (rtb, halo_name, etc) shape_0 = ", ".join("{:13.6e}".format(e) for e in ellipsoid.shape[0]) shape_1 = ", ".join("{:13.6e}".format(e) for e in ellipsoid.shape[1]) shape_2 = ", ".join("{:13.6e}".format(e) for e in ellipsoid.shape[2]) center = ", ".join("{:13.6e}".format(x) for x in ellipsoid.center) ellipsoid_lines = ( "region = ellipsoid\n" "region_ellipsoid_matrix[0] = {s0}\n" "region_ellipsoid_matrix[1] = {s1}\n" "region_ellipsoid_matrix[2] = {s2}\n" "region_ellipsoid_center = {c}\n".format( s0=shape_0, s1=shape_1, s2=shape_2, c=center ) ) return template.replace("", ellipsoid_lines) def write_music_file(output_file, music_config): dirname = os.path.dirname(output_file) if not os.path.exists(dirname): logging.debug("Creating directory {}".format(dirname)) os.makedirs(dirname) with open(output_file, "w") as f: f.write(music_config) def call_music(): pass def process_config(config, args: Args): ellipsoids = [] for halo_name, url in zip(config.halo_names, config.halo_urls): logging.info("Fetching ellipsoids from halo " + halo_name) ellipsoids.append( fetch_ellipsoid( url + "/ellipsoids", config.api_token, config.traceback_radius, args.attempts, ) ) # Edit template logging.info("Creating MUSIC template") music_template = music_config_to_template(config.MUSIC, config.settings) if query_yes_no( "Do you want to edit the MUSIC template before creating the IC files?\n" "(changing zstart, levelmin, levelmax, etc.)", default="no", ): logging.debug("Editing MUSIC template") music_template = edit_template(music_template) logging.debug("Finished editing MUSIC template") # Store template to file for halo_name, ellipsoid in zip(config.halo_names, ellipsoids): if ellipsoid is None: logging.warning( "Ellipsoid for halo {} not available, skipping".format(halo_name) ) continue logging.info("Composing MUSIC configuration file for halo {}".format(halo_name)) music_config = compose_template(music_template, ellipsoid) if args.common_directory and len(ellipsoids) > 1: output_file = os.path.join(args.output_path, str(halo_name), "ics.cfg") else: output_file = os.path.join( args.output_path, "ics_{}.cfg".format(halo_name) ) logging.info( "Storing MUSIC configuration file for halo {} in {}".format( halo_name, output_file ) ) write_music_file(output_file, music_config) # TODO: Execute MUSIC? def downloadstore_mode(args: Args, target: str): logging.info("Fetching download configuration from the cosmICweb server") config = fetch_downloadstore(args.url, target) if args.output_path == "./": args = args._replace(output_path=f"./cosmICweb-zooms-{config.simulation_name}") logging.debug("Output directory set to " + args.output_path) logging.info("Download configuration successfully fetched") process_config(config, args) def publication_mode(args: Args, publication_name: str, traceback_radius: int): logging.info( "Fetching publication " + publication_name + " from the cosmICweb server" ) config = fetch_publication(args.url, publication_name, traceback_radius) args = args._replace(output_path=os.path.join(args.output_path, publication_name)) logging.debug("Output directory set to " + args.output_path) logging.info("Publication successfully fetched") process_config(config, args) def dir_path(p): if os.path.isdir(p): return p else: raise NotADirectoryError(p) @click.group() @click.option( "--url", default=DEFAULT_URL, help="overwrite URL of the cosmICweb server" ) @click.option( "--output-path", type=dir_path, default="./", help="Download target for IC files. If downloading publication, will create a subfolder with the name of the publication", ) @click.option("--common-directory", is_flag=True) @click.option( "--attempts", type=int, default=3, help="number of attempts to download ellipsoids" ) @click.option("--verbose", is_flag=True) @click.pass_context def cli(ctx, url, output_path, common_directory, attempts, verbose): if verbose: logger.setLevel("DEBUG") ctx.obj = Args( url=url, output_path=output_path, common_directory=common_directory, attempts=attempts, ) @cli.command(help="Download ICs using a target UUID generated on cosmICweb") @click.argument("target") @click.pass_context def get(ctx, target): args: Args = ctx.obj downloadstore_mode(args, target) @cli.command(help="Download published ICs using the publication name") @click.argument("publication_name") @click.option("--traceback_radius", type=click.Choice([1, 2, 4, 10]), default=2) @click.pass_context def publication(ctx, publication_name, traceback_radius): args: Args = ctx.obj publication_mode(args, publication_name, traceback_radius) if __name__ == "__main__": cli() # if __name__ == "__main__": # parser = argparse.ArgumentParser() # parser.add_argument( # "--url", # dest="cosmicweb_url", # default=DEFAULT_URL, # help="overwrite URL of the cosmicweb server", # ) # parser.add_argument( # "--output-path", # type=dir_path, # default="./", # help="Download target for IC files. If downloading publication, will create a subfolder with the " # "name of the publication", # ) # parser.add_argument( # "--common-directory", dest="create_subdirs", action="store_false" # ) # parser.add_argument( # "--attempts", # type=int, # default=3, # help="number of attempts to download ellipsoids", # ) # parser.add_argument("--verbose", action="store_true") # subparsers = parser.add_subparsers(dest="mode") # # Downloading from publications # publication_parser = subparsers.add_parser( # "publication", help="download publications" # ) # publication_parser.add_argument("publication_name", help="name of the publication") # publication_parser.add_argument( # "--traceback_radius", type=int, choices=[1, 2, 4, 10], default=2, help="" # ) # # Downloading from download object # download_parser = subparsers.add_parser("get") # download_parser.add_argument("target") # args = parser.parse_args() # if args.verbose: # logger.setLevel("DEBUG") # if args.mode == "get": # downloadstore_mode(args) # elif args.mode == "publication": # publication_mode(args) # else: # raise NotImplementedError("unknown subparser")