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  • aa829134e2 seems like both k-space and new real space work well now, fixed a bug for k-space grid offsets Oliver Hahn 2013-10-29 13:23:47 +0100
  • 3129083718 working backup commit to repository. maybe this one should not be used. Oliver Hahn 2013-10-29 09:45:47 +0100
  • a3b409352d Merged in dnelson86/music/dnelson86/bugfix-to-prevent-convex_hull-from-alway-1382647509467 (pull request #9) Oliver Hahn 2013-10-24 22:45:59 +0200
  • 1b0b0b486d bugfix to prevent convex_hull from always resetting number of omp threads to 1 Dylan Nelson 2013-10-24 20:45:10 +0000
  • 5f467e81d5 tetmesh: fixed an error in GET_SUBSHIFT Oliver Hahn 2013-10-24 20:15:17 +0200
  • 27a6ed893e tetmesh: fixed a bug when computing ref levels Oliver Hahn 2013-10-24 20:11:46 +0200
  • ace5dde0af tetmesh : added new option 'gadget_lagrangevertid' (default=yes) to toggle the usage of lagrange ids as vertex indices Oliver Hahn 2013-10-24 19:53:29 +0200
  • 6c80b317c8 tetmesh: fixed block sizes when outputting/inputting Oliver Hahn 2013-10-24 19:37:41 +0200
  • 2ef810611c tet mesh: writing out base level information to header, level written out is no w.r.t. this base level Oliver Hahn 2013-10-24 18:48:35 +0200
  • 91133a23a4 tet mesh: writing out correct flags with lagrange IDs Oliver Hahn 2013-10-24 17:51:58 +0200
  • f0aad5b35f fixed a bug in tetmesh output with 3 particle types Oliver Hahn 2013-10-24 17:04:33 +0200
  • 37c7f07b83 re-enabled global restriction after noise convolution (this needs to be selectively switched off after k-space noise convolution) Oliver Hahn 2013-10-24 16:58:27 +0200
  • 3413f6f3a2 fixed type making type 3 instead of type 5 particles in header Oliver Hahn 2013-10-24 16:54:36 +0200
  • 3193322bcd made low-resolution tetmesh particles to be type 5 now Oliver Hahn 2013-10-24 16:49:54 +0200
  • c03c80c53d more fixes to noise interpolation when using k-space sampled TF Oliver Hahn 2013-10-24 15:59:16 +0200
  • f6a8398982 fixed periodic boundary conditions for tet-mesh Oliver Hahn 2013-10-24 13:40:54 +0200
  • 5637c20bae fixed a variable reference that has been removed Oliver Hahn 2013-10-24 12:51:51 +0200
  • f19103d266 cleanup and fixes. k-space sampling still needs proper testing (and likely some more fixes) Oliver Hahn 2013-10-24 12:48:35 +0200
  • 9ee8a0a6a9 added header file inclusion to avoid compilation errors Oliver Hahn 2013-10-24 12:33:58 +0200
  • 870107d09c updated k-space sampling of power spectrum on nested hierarchies Oliver Hahn 2013-10-24 12:28:48 +0200
  • 7beb94a1c7 tetmesh output: type 2 particles now *do* carry masses Oliver Hahn 2013-10-24 12:22:46 +0200
  • 6d7672ee43 fixed a problem with writing vertex ids for tetmesh output Oliver Hahn 2013-10-24 11:47:43 +0200
  • 64c06439e5 reverted makefile Oliver Hahn 2013-10-24 11:29:56 +0200
  • ffcc295ffc merge Oliver Hahn 2013-10-24 11:27:31 +0200
  • c74e6dbd55 added missing random number plugin Oliver Hahn 2013-10-24 11:27:09 +0200
  • 14c92dd4ff adding missing headers Raul Angulo 2013-10-24 11:20:01 +0200
  • ccaf6762bd merging upstream changes Oliver Hahn 2013-10-24 10:53:40 +0200
  • 82beef69a6 fixed a bug when expanding convex hulls Oliver Hahn 2013-10-23 23:16:47 +0200
  • f920a3377e merge Oliver Hahn 2013-10-23 23:03:59 +0200
  • 90f0d15170 merge (with experimental new rewrite of random number factory) Oliver Hahn 2013-10-23 23:03:28 +0200
  • 507b6daa41 added output plugin with refined tetrahedral mesh connectivity structure Oliver Hahn 2013-10-23 22:56:35 +0200
  • 3c67f672d3 fix potential segfault related to STL in convex_hull.hh Dylan Nelson 2013-10-22 18:30:10 +0000
  • 60d2aede0f generalize output_arepo for non-box regions Dylan Nelson 2013-10-22 18:28:48 +0000
  • a1cf2812fe fixed a bug when expanding convex hulls Oliver Hahn 2013-10-17 17:27:56 +0200
  • 9bcedeb883 some fixes to density coarsening Oliver Hahn 2013-10-17 16:35:30 +0200
  • c7d5e09e4f fixed leftover diff marks in Makefile Oliver Hahn 2013-10-13 00:16:25 +0200
  • 09c8251d06 merge Oliver Hahn 2013-10-13 00:14:26 +0200
  • 97ba38177b fixed missing coarsening when levelmin_TF is set Oliver Hahn 2013-10-12 23:57:14 +0200
  • b4af40ed57 fixed fft interpolation for fft-kernel Oliver Hahn 2013-10-10 23:33:16 +0200
  • 7177cfe2bf initial local commit of MUSIC 2.0 Oliver Hahn 2013-10-10 23:24:21 +0200
  • 3eca845d10 merge Oliver Hahn 2013-09-25 21:04:28 +0200
  • ef46d58653 added new parameter file options to specify the bounding ellipsoid directly, the new options are region_ellipsoid_matrix[0-2] for the matrix and region_ellipsoid_center for the ellipsoid center. Oliver Hahn 2013-09-25 21:02:12 +0200
  • 814247421b added parameters to specify the ellipsoid explicitly Oliver Hahn 2013-09-25 06:05:17 +0200
  • ba4f22bd7a added code to generate white noise fields for LasDamas ICs inside MUSIC, not interfaced to the parameter file yet Oliver Hahn 2013-09-08 16:11:17 +0200
  • 6eb82444c3 fixes to the noise interpolation, improves stability of large-scale modes (update recommended) Oliver Hahn 2013-08-27 22:26:59 -0700
  • 5d84806257 fixes to the noise interpolation, improves stability of large-scale modes substantially Oliver Hahn 2013-08-27 21:50:51 -0700
  • 7db63aba4a fixes the missing 'exit' in arepo plugin. now plugin (as ENZO and generic) is simply unavailable when HDF5 is not present Oliver Hahn 2013-08-23 08:11:41 -0700
  • 6e785f642d minor fixes of compilation/makefile issues Oliver Hahn 2013-08-15 16:32:37 -0700
  • 82549d5f07 fixed typo in readme Oliver Hahn 2013-08-08 15:25:05 +0200
  • 107663e54a updated readme file Oliver Hahn 2013-08-08 15:24:04 +0200
  • a17f70e119 fixed a compile error in arepo plugin when HAVEHDF5=no Oliver Hahn 2013-08-08 15:23:12 +0200
  • 69236a2032 Initial addition of output plugin for Arepo (HDF5). Dylan Nelson 2013-08-07 16:45:11 -0400
  • cb1b8ef1ab updated feature list in readme Oliver Hahn 2013-08-07 18:17:16 +0200
  • 90af2f9f93 fixed a bug that lead to the base hierarchy not being created properly when using no refinement and having fft_fine switched off Oliver Hahn 2013-08-07 18:14:22 +0200
  • 6d29773b3a fixed a compilation error in convex_hull.hh Oliver Hahn 2013-08-07 14:11:28 +0200
  • a0f6dc2ba2 added proper expanding of convex hull, some optimisations Oliver Hahn 2013-08-07 12:29:23 +0200
  • d3e48b3ec9 added support for convex hull based high-res regions Oliver Hahn 2013-08-05 00:40:34 +0200
  • 0c5cb001e9 moved point file reader to its own class Oliver Hahn 2013-08-04 23:58:56 +0200
  • eec818093d more readme updates Oliver Hahn 2013-08-03 06:29:08 +0200
  • 0671ff64de fixed typo in readme Oliver Hahn 2013-08-03 06:18:27 +0200
  • 385e7e85dc updated readme file Oliver Hahn 2013-08-03 06:16:29 +0200
  • 835a49b731 fixed ascii art in readme Oliver Hahn 2013-08-02 18:08:45 +0200
  • 42a57913c7 added copyright and license stuff Oliver Hahn 2013-08-02 18:05:17 +0200
  • e0ef7980e7 fixed a bug in the ramses tool get_music_refmask that not all particles are read in some cases Oliver Hahn 2013-07-31 10:48:39 +0200
  • 9e179fa1c5 added new subdirectory for extra tools for codes. first one is mask generator for ramses (which is also in the ramses svn repo; it doesn't support velocities yet) Oliver Hahn 2013-07-29 17:57:30 +0200
  • 6df708ce8d code now explicitly fails if zoom region is more than half box size instead of having undefined behaviour. fixed a missing default option for levelmin_TF in constraints.cc. Oliver Hahn 2013-07-29 17:56:15 +0200
  • 8657bdee4d fixed that region for refinement needs to be specified even if no zooms are performed. fixed that whitespace after makefile options might lead to odd behaviour Oliver Hahn 2013-07-25 19:16:53 +0200
  • 3343fd7cdd added a new transfer function 'eisenstein_suppress' with an additional parameter [cosmology]/ktrunc to suppress large-scale power Oliver Hahn 2013-07-05 18:43:40 +0200
  • c23c280b51 reverted some default choices in Makefile and example parameter file after merging of NYX plugin Oliver Hahn 2013-06-04 10:04:09 +0200
  • eb86e9c56b Merged in jfe/music/nyx (pull request #6) Oliver Hahn 2013-06-04 09:56:37 +0200
  • fd99f2e618 some bugfix JFEngels 2013-05-31 16:10:03 +0200
  • efba81d2a8 some more cleanup JFEngels 2013-05-30 13:41:00 +0200
  • 6575a9f836 some cleanup JFEngels 2013-05-30 12:06:11 +0200
  • 32f721f77c fixed a bug that caused refinement masks (i.e. ellipsoid) not being applied properly when using 2LPT Oliver Hahn 2013-05-27 15:22:16 +0200
  • 2fa018e6cf fixed missing padding for refinement masks when using grafic2/ramses output and box ics Oliver Hahn 2013-05-21 22:36:02 +0200
  • cd33d50702 improve last commit JFEngels 2013-05-13 17:19:37 +0200
  • 44854adb14 make inputs file contain the correct blocking factor JFEngels 2013-05-13 17:02:50 +0200
  • 48e4f7004d we now enforce the blocking factor...this time for real JFEngels 2013-05-10 12:24:50 +0200
  • 6c2a606108 we now write multiple boxes instead of one large JFEngels 2013-05-07 15:28:24 +0200
  • 1579ffc95a some convenience adjustments to output better ramses namelist files Oliver Hahn 2013-05-03 16:23:52 +0200
  • 024e81dc8d some merge... JFEngels 2013-04-23 18:02:16 +0200
  • ad67f23f30 reduced the padding around ellipsoids when not using RAMSES output Oliver Hahn 2013-04-21 11:55:36 +0200
  • 72ea09abcb fixed a numerical accuracy issue with the ellipsoid regions Oliver Hahn 2013-04-21 11:43:11 +0200
  • 9ace4d1dd3 merge Oliver Hahn 2013-04-19 16:45:56 +0200
  • ead40fd5b6 added support for ellipsoid region files that include velocity information to correctly deal with the initial displacement of the particles from their Lagrangian coordinates Oliver Hahn 2013-04-19 16:45:48 +0200
  • 60aa00bb83 Added #include <unistd.h> to output plugins so they can see unlink in gnu >= 4.7.0 galtay 2013-04-16 14:28:52 -0500
  • 7d156c8958 fixes to CAMB transfer function plugin. now supports extrapolation out of tabulated region Oliver Hahn 2013-04-07 21:59:43 +0200
  • b09262124f fixed a bug that WDM transfer functions did not work properly with some compilers Oliver Hahn 2013-04-04 23:37:10 +0200
  • 7e69a43036 added new option "gadget_cell_centered=yes/no" to enable half-cell shift for gadget particle positions Oliver Hahn 2013-03-21 22:09:59 +0100
  • edb2dce773 gadget2: added option to write out long ids, even if not needed for ICs themselves Oliver Hahn 2013-03-15 16:15:36 -0700
  • b0ffdc5d62 Merged in ohahn/music-iodevel (pull request #4) Oliver Hahn 2013-03-08 11:39:47 -0800
  • c08d523265 Added enzo_refine_region_fraction parameter. It sets the erfine region output in the parameter file to this fraction times the finest grid size. Oliver Hahn 2013-03-07 17:39:57 -0800
  • 4ca8971bd7 fixed a bug that can occur with refinement region positiong when too much whitespace occurs in the position definition in the parameter file Oliver Hahn 2013-03-05 15:25:48 -0800
  • 9c89e837b5 added notification mechanism so that region generator plugins can be updated about the grid hierarchy that was actually created. this fixes also the problem with high res regions not being necessarily equal to the grid size available when using the is_refined member function Oliver Hahn 2013-02-22 00:01:37 +0100
  • 2c6362323d fixed the odd behaviour that for the new 'box' regions, the number of cells output for the high-res region does not necessarily agree with what's called 'refined' -- force_equal_extent is not respected either at the moment. Oliver Hahn 2013-02-21 19:01:06 +0100
  • 14675047ef some corrections to the grid layout... JFEngels 2013-02-19 14:52:53 +0100
  • 77183c6e20 improvements to WDM transfer function parameterisations, now support for Bode et al. 2001 and Viel et al. 2005 parameterisations, fixed missing factor of h in old Bode+2001 parameterisation Oliver Hahn 2013-02-18 16:17:13 +0100
  • 048bd978f5 removed fortran warning flag in inputs file generation. ch b 2013-02-18 14:49:50 +0100
  • 06bbc50da4 i dont know...maybe merge JFEngels 2013-02-13 18:02:06 +0100
  • ebf6fa6167 some units fixed JFEngels 2013-02-13 17:55:01 +0100