diff --git a/.gitignore b/.gitignore
index 5acb669..4640298 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,3 @@
 build
 .vscode
+src/cmake_config.hh
\ No newline at end of file
diff --git a/Makefile b/Makefile
deleted file mode 100644
index 1dad77a..0000000
--- a/Makefile
+++ /dev/null
@@ -1,130 +0,0 @@
-##############################################################################
-### compile time configuration options
-FFTW3		= yes
-MULTITHREADFFTW	= yes
-SINGLEPRECISION	= no
-HAVEHDF5        = yes
-HAVEBOXLIB	= no
-BOXLIB_HOME     = ${HOME}/nyx_tot_sterben/BoxLib
-
-##############################################################################
-### compiler and path settings
-CC      = g++
-OPT     = -Wall -Wno-unknown-pragmas -O3 -g -mtune=native
-CFLAGS  =  
-LFLAGS  = -lgsl -lgslcblas 
-CPATHS  = -I./src -I$(HOME)/local/include -I/opt/local/include -I/usr/local/include
-LPATHS  = -L$(HOME)/local/lib -L/opt/local/lib -L/usr/local/lib
-
-##############################################################################
-# if you have FFTW 2.1.5 or 3.x with multi-thread support, you can enable the 
-# option MULTITHREADFFTW
-ifeq ($(strip $(MULTITHREADFFTW)), yes)
-  ifeq ($(CC), mpiicpc)
-    CFLAGS += -openmp
-    LFLAGS += -openmp
-  else
-    CFLAGS += -fopenmp
-    LFLAGS += -fopenmp
-  endif
-  ifeq ($(strip $(FFTW3)),yes)
-	ifeq ($(strip $(SINGLEPRECISION)), yes)
-		LFLAGS  +=  -lfftw3f_threads
-	else
-		LFLAGS  +=  -lfftw3_threads
-	endif
-  else
-    ifeq ($(strip $(SINGLEPRECISION)), yes)
-      LFLAGS  += -lsrfftw_threads -lsfftw_threads
-    else
-      LFLAGS  += -ldrfftw_threads -ldfftw_threads
-    endif
-  endif
-else
-  CFLAGS  += -DSINGLETHREAD_FFTW
-endif
-
-ifeq ($(strip $(FFTW3)),yes)
-  CFLAGS += -DFFTW3
-endif
-
-##############################################################################
-# this section makes sure that the correct FFTW libraries are linked
-ifeq ($(strip $(SINGLEPRECISION)), yes)
-  CFLAGS  += -DSINGLE_PRECISION
-  ifeq ($(FFTW3),yes)
-    LFLAGS += -lfftw3f
-  else
-    LFLAGS  += -lsrfftw -lsfftw
-  endif
-else
-  ifeq ($(strip $(FFTW3)),yes)
-    LFLAGS += -lfftw3
-  else
-    LFLAGS  += -ldrfftw -ldfftw
-  endif
-endif
-
-##############################################################################
-#if you have HDF5 installed, you can also enable the following options
-ifeq ($(strip $(HAVEHDF5)), yes)
-  OPT += -DH5_USE_16_API -DHAVE_HDF5
-  LFLAGS += -lhdf5
-endif
-
-##############################################################################
-CFLAGS += $(OPT)
-TARGET  = MUSIC
-OBJS    = output.o transfer_function.o Numerics.o defaults.o constraints.o random.o\
-		convolution_kernel.o region_generator.o densities.o cosmology.o poisson.o\
-		densities.o cosmology.o poisson.o log.o main.o \
-		$(patsubst src/plugins/%.cc,src/plugins/%.o,$(wildcard src/plugins/*.cc))
-
-##############################################################################
-# stuff for BoxLib
-BLOBJS = ""
-ifeq ($(strip $(HAVEBOXLIB)), yes)
-  IN_MUSIC = YES
-  TOP = ${PWD}/src/plugins/nyx_plugin
-  CCbla := $(CC)
-  include src/plugins/nyx_plugin/Make.ic
-  CC  := $(CCbla)
-  CPATHS += $(INCLUDE_LOCATIONS)
-  LPATHS += -L$(objEXETempDir)
-  BLOBJS = $(foreach obj,$(objForExecs),src/plugins/boxlib_stuff/$(obj))
-#
-endif
-
-##############################################################################
-all: $(OBJS) $(TARGET) Makefile
-#	cd plugins/boxlib_stuff; make
-
-bla:
-	echo $(BLOBJS)
-
-blabla:
-	echo $(OBJS)
-
-ifeq ($(strip $(HAVEBOXLIB)), yes)
-$(TARGET): $(OBJS) src/plugins/nyx_plugin/*.cpp
-	cd src/plugins/nyx_plugin; make BOXLIB_HOME=$(BOXLIB_HOME) FFTW3=$(FFTW3) SINGLE=$(SINGLEPRECISION)
-	$(CC) $(LPATHS) -o $@ $^ $(LFLAGS) $(BLOBJS) -lifcore
-else
-$(TARGET): $(OBJS)
-	$(CC) $(LPATHS) -o $@ $^ $(LFLAGS)
-endif
-
-%.o: src/%.cc src/*.hh Makefile 
-	$(CC) $(CFLAGS) $(CPATHS) -c $< -o $@
-
-src/plugins/%.o: src/plugins/%.cc src/*.hh Makefile 
-	$(CC) $(CFLAGS) $(CPATHS) -c $< -o $@
-
-clean:
-	rm -rf $(OBJS)
-ifeq ($(strip $(HAVEBOXLIB)), yes)
-	oldpath=`pwd`
-	cd src/plugins/nyx_plugin; make realclean BOXLIB_HOME=$(BOXLIB_HOME)
-endif
-	cd $(oldpath)
-